Resume Biography Gallery Digital Images Projects
Josh Grant
 
Scientific Visualization
Show and Tell
Volume (Jello)
Streamline (Spaghetti)
Volume (Balloons)
Flow
Magnetic Field
Open Inventor
Introduction
Marching Cube
Marching Cubes
Volume Rendering
Isosurfaces
Final Project
Brain Topology
 

Examining Topology on Computer Generated Brain Surfaces


Abstract:

When creating an isosurface the overall topology of the surface is crucial to accurately depicting the original. Medical imagery is a prime example of when the surface created needs to be topologically correct, otherwise it is difficult to differentiate a medical problem from a computer graphics problem. In this project MRI scans of a brain are used to generate an isosurface and then the topology is checked. Two of the most popular methods for generating an isosurface are used; Marching Cubes and Marching Tetrahedron. Surfaces created from both algorithms are checked for topological problems and compared.

Paper:

braintopology.pdf

Related Work:

FlatKit

Source Code:

Goto the Marching Cubes page.

Results:


Created using
Marching Cubes
algorithm

Created using
Marching Cubes
algorithm

Close up view of surface
created using Marching Cubes

Close up view of surface
created using Marching
Tetrahedra algorithm

Created using
Marching Tetrahedra
algorithm

Close up view of just the Cerrebellum.
Notice the bridges Marching Cubes created

Close up view of just the Cerrebellum.
Marching Tetrahedra produces similar bridges

The little floating polygons
are just one of the many problems that are created when visualizing data
like this.

Cerrebellum as part
of the entire brain

Some more bridges made by Marching Cubes
 

Josh Grant > Projects > Scientific Visualization > Brain Topology

Comments or questions about this page can be addressed to Josh Grant at grant@cs.fsu.edu